rs52393308 SNP Detail

Summary

• ID
  rs52393308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGTGAG CCACCATGTG
  GTTGCTGGGA TTTGAACTCG GGACCTTTGG AAGAGCAGTC GGCACTCTTA ACCACTGAGC
  CATCTCGCCA GCCTTGTGAC CAATTCTTTA CCACATCAGC TTGAGCACTC CAGAACTGTG
  GCTTCAATTT TAATGACAAG CATTGACACC ACACATAATA TGAAATCTGA CTTCTAAATG
  Y
  ATTTGTTATT TTCCTTATAT TATTCATTTT AGTCAATTAT ATATTTTTTA ATGTGGAAGA
  TATGTGCAAC TAATATAATC AAAACACATT TATCCATGTT GTTAAAAGAA AATATATAAT
  CTTCCAGATA CCTTTTAAAA ATATTTATTC TCGAGAAAGA TGAATAGTGA GCTCCTGTGT
  GATGACCACA TAAAGGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135542869	ENSMUSSNP1290678	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320850234	CHEV_3_100720013	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52393308					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823406 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	870 bp downstream
Rr581925	regulatory region 581925	753 bp proximal
Rr581926	regulatory region 581926	847 bp proximal