rs52393985 SNP Detail

Summary

• ID
  rs52393985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGATGG CTCAGTGGGT
  AAGAGCACCC GACTGCTCTT CTGAAGGTCC AGAGTTCAAA TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCCGTAACAA GATCTGACTC CCTCTTCTGG TGTCTGAAGA CAGCTACAGT
  GTACTTACAT ATAATAATAA ATAAATCTTA AAAAAAAAAA AAAAAGAATT TTCCTTATCA
  R
  GTAGCAAAAA AATTTTTTGA GAGTTTTTTT TTTTTTGTTT TTTGTTTTTT TTTTAGCCTG
  GTTTAAACAG TGAGTTCCAA GACAGCTGGG GCTACAAAGA GAGACTCTGT TTCAAAAAAA
  TTTTTTTTCA AAATTTAATT TCATGTGTCG TGCCTGAATA TGTGCATCAT GTGCATACCT
  TGTGTCTGCA GACCCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145701276	ENSMUSSNP3558590	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52393985					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	941 bp proximal
Cpgi9243	CpG island 9243	1986 bp proximal
Gm65860	predicted gene, 65860	1285 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Rr331605	regulatory region 331605	1888 bp distal
Rr331606	regulatory region 331606	88 bp distal
Rr331607	regulatory region 331607	313 bp proximal
Rr339923	regulatory region 339923	512 bp proximal
Tssr148377	transcription start site region 148377	1439 bp upstream
Tssr148378	transcription start site region 148378	1420 bp upstream
Tssr148379	transcription start site region 148379	1407 bp upstream
Tssr148380	transcription start site region 148380	1044 bp upstream
Tssr148381	transcription start site region 148381	390 bp upstream
Tssr148382	transcription start site region 148382	1396 bp downstream