rs52394307 SNP Detail

Summary

• ID
  rs52394307
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24599072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAGGGAGATT AGAGACTCAA GTGGTGGCAC GTTACGTGCA
  TGTATGTTTT TGTTTGGTTT GGGTTGAGGG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  S
  TGTGTGTAGT TTTTTTTTTT AACTCTCAGG TCTGTTTTCA CATATTCCTT CTCACGAAAC
  CACCACTTCC TGTGATGCCA GGGAGCATAG AGATTGTCTG G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092990	ENSMUSSNP5110187	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52394307					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24599072 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Atg9b	autophagy related 9B	1931 bp upstream
Cpgi15597	CpG island 15597	162 bp proximal
Rr112283	regulatory region 112283	472 bp distal
Rr124925	regulatory region 124925	within coordinates
Rr398998	regulatory region 398998	365 bp downstream
Rr398999	regulatory region 398999	95 bp upstream
Tssr45411	transcription start site region 45411	410 bp downstream
Tssr45412	transcription start site region 45412	314 bp upstream
Tssr50318	transcription start site region 50318	1580 bp upstream
Tssr50319	transcription start site region 50319	1376 bp upstream