rs52394337 SNP Detail

Summary

• ID
  rs52394337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44213168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GGCTACACAG AGAAACCCTG
  Y
  CTTGGAAACA AACAAGCAAA CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148061266	ENSMUSSNP4190313	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325162672	CHEV_16_44392918	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52394337					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44213168 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	1991 bp upstream
Rr516303	regulatory region 516303	258 bp distal
Rr516304	regulatory region 516304	1504 bp proximal
Tssr138551	transcription start site region 138551	1966 bp upstream
Tssr138552	transcription start site region 138552	2000 bp upstream