rs52394412 SNP Detail

Summary

• ID
  rs52394412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTTTGGT TTTTTATTTC CTTCTGCAGA TTTTCTGTAT
  TTTCTGACTT TCTACTTAAT TTTATCTACC ATCCTGTGCA TCCCACACAC TTTATTGTCC
  R
  TTTTTCCTCA TGCAAATTTC AAGACCTAAC ATGTCTCCCC TTTGCAGCTT GTATTCCTCC
  CCGACTGTGT TCCTCAGTTG CTACTGCCAT CGCGGTCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62443715	NES17255323	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G		G	G	A	G	A	G
ss139660903	ENSMUSSNP39877	ENSEMBL	ENSEMBL_Sanger	f	SNP					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52394412					SNP	A	A	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443715	NES17255323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830079 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	786 bp proximal
Tssr126359	transcription start site region 126359	1664 bp upstream