rs52394576 SNP Detail

Summary

• ID
  rs52394576
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14370689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCAGCC CAGAGTCTTG
  TTTATCAAGC AGTGTTTGGG GGTTCATCAT CTGGAGGCTA AAGCCCCACA AAAGCCTTCT
  GTGTCTCTGT CTCTTTGTCT CGCCGTCTCT TTTTCCATCT CGCTGTCTCT GTCTCTTGTT
  TCTGACGTTC CCTGTGTGTT TATCTCTGTT TCTGTGTGTG TATGTTCAAA TTCTTCGCTA
  G
  TCAAAGAGAT CTTTCATTCT GATGTATTAA AGCAGGACTT TTTAGAGCCC TGTTACCTCT
  CCGACAGCCT TGCTTTGTAG GTCAGGATTG TTGAAAGCAT TTATTCTCAC TTAGAGAAAT
  GACTGTCTTT TTTTAAAAAA TGCACTTTTT CTCCCAATGG TAGGTAACAT CCTAAGTCCT
  ATTGTAGAAA CTTATGAAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138986240	ENSMUSSNP499961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52394576					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14370689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			286 bp proximal
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			318 bp distal
Rr487875	regulatory region 487875			819 bp proximal
Tssr4245	transcription start site region 4245			515 bp downstream
Tssr124235	transcription start site region 124235			788 bp downstream