rs52395246 SNP Detail

Summary

• ID
  rs52395246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75555204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAACCAA CATCTGTCTC
  TGTCATTTGA AGGTGGTTCT TTTAGACTTT TTGAAAAAGA GGATTTATTT ATTTATCTTA
  TGTATATGAG TACACTGTAG CTGTCTTCAG AGTCACCAGA AGAAGACATC AGATCCCACT
  ACAGATGGTT GTGAGCCACC ATGTGGTTGC TGGGAATTGA ACTCAGGACC TCTAGAATAG
  Y
  AGCCAGTGCT CTTAACCACT GAGCCATCTC TCCAGCCCTC TTTTAGACTT TTTTTTTAAA
  AATTTATTTG TTTGTTTTTT GTATATGAGT GCTCTGTCTG CATGTACACC TGCATGCCAG
  AAGAGGGCGT CAGATCTCAT TACAGATGGT TGTGAGCCAC CATGTAGTTG CTGGGAATTG
  AACTCAGGAC CTCTGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144696791	ENSMUSSNP2273633	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52395246					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75555204 () rs orientation: forward

Symbol	Name	Function Class
Gm69448	predicted gene, 69448	1445 bp upstream