rs52395514 SNP Detail

Summary

• ID
  rs52395514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88971908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCCCACC CCAAATAGGA ACACACACAT ACACTCGCGA
  GCGCGCGCGC ACGCACACGC ACACACACAA ACACACACAC ACACACACAC ACACACACAC
  R
  CGCTCGTGGG TGCACTCACA AGCACCTACT AGGCAACTCC TCTGCCACTA AGTGACCCTT
  ACCAATGGTG ACTGGAAAGC TAGAGGACCT ATTGAGTGAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss61911640	NES17093015	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs52395514					SNP	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911640	NES17093015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88971908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	1507 bp distal
Cpgi5920	CpG island 5920	within coordinates
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Gm38504	predicted gene, 38504	395 bp upstream
Tssr120572	transcription start site region 120572	1875 bp downstream
Tssr120573	transcription start site region 120573	1847 bp downstream
Tssr120574	transcription start site region 120574	1813 bp downstream
Tssr120575	transcription start site region 120575	194 bp downstream
Tssr120576	transcription start site region 120576	425 bp upstream
Tssr123374	transcription start site region 123374	1994 bp upstream