rs52396007 SNP Detail

Summary

• ID
  rs52396007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTAACC CATGTGTCAC
  TTAAAATCAT TCCTAACTAG GGATTAATCC ACTCTTATAT GAGTCTTCAT TTCCCAGCTA
  GCCTTGATCT GTACACGTGC CCCTTTTCTT CCTCTGAGTA CAGTAACTGC GGCTAGGTCC
  AATACAAAAC CAAACAAAAA CAAAACAAAG ACAACAAATA AAAAACAACA CTAGCCAAAA
  Y
  AGCAAGACCA GAACACGAGG CTAGAGGGGA ATTGTACCAA CACAAACATC CTCAGAAACT
  GAGCATTCAC GGTCTGGCCG CAGAAATCCC CGCCATTCAC AACCAACCTG GGATGGGTTT
  ATGATGCCAG CTACATGGAA GGCTGAGGCA GGAGGATTCT AAATTTAAGG CCAGCTGGGG
  CAACTGACTG AGACCCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716389	ENSMUSSNP644699	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323830208	CHEV_11_99853732	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52396007					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1123 bp proximal
Krtap17-1	keratin associated protein 17-1	816 bp downstream
Tssr110721	transcription start site region 110721	1574 bp downstream