rs52396802 SNP Detail

Summary

• ID
  rs52396802
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3730034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAGGCAGAG GCAGGCGGAA TTCTGAGTTC AAGGCCAGCC
  TGGTCTACAG AGTGAGTTCC CTAACAGCCA GGGCTACACA GAAAAACCCT GCCATGAAAA
  A
  CCAAAAAAAA AAAAAAAAAA AAAAAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAAAGAA
  AAAAGAAACT GGCCCACAGC AGGCTGGCCC ACAGCCTGAT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146262816	ENSMUSSNP6964711	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52396802					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3730034 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1192 bp downstream
Rr396754	regulatory region 396754	1874 bp downstream
Rr550942	regulatory region 550942	510 bp distal
Rr550943	regulatory region 550943	1795 bp proximal
Tssr15911	transcription start site region 15911	1812 bp downstream
Tssr15912	transcription start site region 15912	1960 bp upstream