rs52397169 SNP Detail

Summary

• ID
  rs52397169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115351403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTAAA TTTCAAAAAT
  GGCTAACTTT AGAGGCTAGA AACTTCTTTC AGATATGTTC AAGTAATATT TGCCTTTCCC
  ACAGGTCATA TACTTCAAAA TTCACTAAAA TGACTAAAAG TACATGCGGT TAACAATATT
  TACACTTCAA TGATTATTAA AGCACTATCA TGATTAAATA AATTTTCATT ATAAACTATA
  R
  ATGTGTCAAC AAAGGATTTT ATCACTAAGT CATGGATTTC ATATATATAT ATATATGTAT
  ATATATAGAC ACATATATAT GTATATATGT GTGTGTGTGT GTGTGTGTTT TACCAGAAAT
  TTACATTGCT TTTGGAAAAA AATGAATGCA ATTAGATATA ACTATATTAA TTAAGACAAT
  CTCAATATCA AAAACATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61730842	NES17649386	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		A	A	G
ss324189782	CHEV_12_116625994	CHEVERUD	SCREENING_POP	f	SNP				G				A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs52397169					SNP	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61730842	NES17649386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115351403 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	within coordinates
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	795 bp upstream