rs52397405 SNP Detail

Summary

• ID
  rs52397405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41182694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATATA TCTTTGTGTG
  TATGAGCCTC TGTGTATATG TGCCTGTATG TATCTGTATG AGAGTAAAAT TGAGCCTATG
  TGTATGTACC CCAAAATGTG TATATAAGAT TGTGTGTGTA TGTGTATGTC TGAGTGCATG
  TGTGTGAGTG GATGTGTGTC TGTGTGTGTA AGGATGGGAA AGAAGGCTGC CATTACTCTC
  Y
  ATGTTGAAAC TTAGGTGAAT CTCGGGGATT AGGTGTTACT GCTCACAGTG GCTAAGAAAC
  TGCACATCCT AAAATCTGCA CACAGTTCTA AATTGAAGCT CTAAATAGCA CTGGATTGAA
  GTGACAGGAG TGTTTCGACA ATACCATTAA TTGCATTCCA CTAATTGAGA AGAGCTTTTG
  TGCAGTTAGG TTTGTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60399182	NES15898921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52397405					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399182	NES15898921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41182694 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	149 bp proximal
Rr575922	regulatory region 575922	387 bp proximal