rs52397770 SNP Detail

Summary

• ID
  rs52397770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121267363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT TAGTGCTCTT ACCTGCTGAG
  Y
  CATCTCACCA GCCCTTTTTT TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147386074	ENSMUSSNP2370398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320483155	CHEV_2_121262618	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52397770					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121267363 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	1741 bp distal
Rr563822	regulatory region 563822	1820 bp distal
Tssr19767	transcription start site region 19767	960 bp downstream
Tssr19768	transcription start site region 19768	518 bp downstream
Tssr19769	transcription start site region 19769	725 bp upstream
Tssr19770	transcription start site region 19770	1023 bp upstream