rs52398045 SNP Detail

Summary

• ID
  rs52398045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118571278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAGAGGG GCGTGGTCAC TGGAGTTCCA AGCTCCCTGG
  GAGGAAGTTA TGGGCTGGTG TTCAGGCAGC ACCTCTGTGA ATGTGTGAGT GCATGTGGGT
  W
  TGTATGCACG CTGTGTATAA GTGCGCATGT GTGCATGTGC CCATGAGAGT GCATGTGTGC
  CGGGTGTGTG CATACATGTT TGTGTGACTG TATTTGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133584355	ENSMUSSNP676085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss321925386	CHEV_6_118544335	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52398045					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118571278 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Cpgi17905	CpG island 17905	276 bp distal
Gm38887	predicted gene, 38887	1839 bp upstream
Rr637493	regulatory region 637493	791 bp distal
Rr637494	regulatory region 637494	372 bp distal