rs52398706 SNP Detail

Summary

• ID
  rs52398706
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTAGGG AACACTGGGT
  GAGGTAACAT CAGAACTTTT CCTACCCCTT GGCACTTTTC TGTAAAACAA ATATTTTTTT
  TCTTTCAAAA AGCAAATCTT GCTGGGCAGT GATGGCGCAC ACCTTTAATT CTAGCACTCC
  GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC
  W
  GGACAGCCAG GGCTATACAG AAAAACCCTG TCTCGAAAAC AAAACAAAAC AAAACAAAAG
  CAAAGCAAAA CAAAAGCAAA GCAAAGCTTA AAAGTTCAAA AGCATAAGGA CTGCAGGTCT
  TTCTTCGATT AGATCCTGGC TGGATGTATT TCAAACTCTC TTTTTCCTTC ACCAGGGTTT
  GGTACCAGGC ACCATGTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665699	ENSMUSSNP5556032	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52398706					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1404 bp proximal
Mtfr1	mitochondrial fission regulator 1	976 bp upstream
Rr397614	regulatory region 397614	1635 bp upstream
Tssr28500	transcription start site region 28500	951 bp upstream
Tssr28501	transcription start site region 28501	970 bp upstream
Tssr28502	transcription start site region 28502	1008 bp upstream
Tssr28503	transcription start site region 28503	1015 bp upstream
Tssr28504	transcription start site region 28504	1734 bp upstream
Tssr28505	transcription start site region 28505	1748 bp upstream
Tssr28506	transcription start site region 28506	1761 bp upstream
Tssr28507	transcription start site region 28507	1863 bp upstream
Tssr28508	transcription start site region 28508	1875 bp upstream
Tssr28509	transcription start site region 28509	1937 bp upstream