rs52399435 SNP Detail

Summary

• ID
  rs52399435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30905840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAACACG GGCAGCACTG
  GGTATGGCAG CATGTTAGCA ATTGTGGGCA TAAGTGGAGA GGGCACAGTG AGTCTAGTGG
  TTAGCGTCAG CATGGTAGAT AGAAGGAAGA GGAGGAGAAA ATCATATGGA CATAAACATC
  CAGAACAAAG ATAGGCTGTC TGACAGCCTG TCTCTCGGGA GGCTGAGGCA CAGGGATGCT
  R
  CAATAGAGGC CAAACTGTGT TCTTTGTGAG AAAAAGAAAG CAGAAGACAA GATTAAGGAG
  AAAAAGAGAA GAAAAGAGAG GTGAAGAACC AGAACCAACG GCTTTGGTGT TGAGCCGAGA
  GGCTGGGTGG AGACACAGGA TATGACAACT GACAGGCCTG TTGCCCACTC ACATCTTTAC
  TCTATGATGT CCCTTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988997	NES16133996	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52399435					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988997	NES16133996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30905840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1780 bp proximal
Gm37292	predicted gene, 37292	1942 bp upstream
Gm73020	predicted gene, 73020	1899 bp upstream
Rr645057	regulatory region 645057	1558 bp proximal
Rr645058	regulatory region 645058	1938 bp proximal
Tssr65855	transcription start site region 65855	1417 bp upstream
Tssr65856	transcription start site region 65856	1911 bp upstream
Tssr65857	transcription start site region 65857	1955 bp upstream