rs52400265 SNP Detail

Summary

• ID
  rs52400265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116151397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACCGGT GAGTTCCTCC
  TCTTTTGCTC AGCAAAAGCC AAGTTCAAAT TGAGTTTAAA TCCAGTTTGC TGTTTGGATA
  ATGGTACTGT AGGGCAAATT GATATTCATG TGAGTTATAG AAAGACGTTA ACATTTATCC
  ATCTTCGTGA AGAGAAATGA ATCGCTTTTA TTCTAACGTT GAAGCTCGCC CTTGGCAACA
  Y
  CCTGAAGCAA AGTTGCTGAT GTGGTTCAAA CTTTTCCATT TAATACATTT ATACATTAAT
  ACATTTATAC ATTAATACAT TTATACATTA ATACATTTAA TACCCAAGCC CCCTTCCTCT
  CCCTCTTAAG TAGGCATTTG CTATCTTTGT GAGCACCCGG AGTGAGTTTT GGAGTGCTTT
  TCTTAGGGCT GTATGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61317761	NES16933117	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss323487247	CHEV_10_115752548	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52400265					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61317761	NES16933117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116151397 () rs orientation: forward

Symbol	Name	Function Class
Ptprb	protein tyrosine phosphatase receptor type B	within coordinates
Tssr95861	transcription start site region 95861	416 bp downstream