rs52401009 SNP Detail

Summary

• ID
  rs52401009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126420940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTGTTTT GTTTTTTTGT AAAACCCGGC
  ATGAAACCGC TTTGGCGCAT GGTACAAGCT TGTTTAGAAG ATaagcggta tgtcaaagca
  gtaaagacaa gtcagaaaat tcttacagaa caacaagaaa gtatgtcaga ggaagataag
  R
  aacgaatgag cagaaaaagg gtgaaagggg tgagaaagaa caaggaaaag aaaaaggagg
  aaaaataaaa gTAATCAGTG ATAAAGAAAA GGAAATAGTG AAGATATATC CCTCTCTAAA
  GGATTTAAAT TTATCAAGCT CTGCTTCCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147721177	ENSMUSSNP4210054	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323527335	CHEV_10_126022127	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52401009					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126420940 () rs orientation: forward

Symbol	Name	Function Class
Gm47965	predicted gene, 47965	1619 bp downstream