rs52401903 SNP Detail

Summary

• ID
  rs52401903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA TTAGAATTAG ACTTTTTCCT
  Y
  ACTTTATTTA CTCATGAAAT TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147206120	ENSMUSSNP6691034	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320456101	CHEV_2_109756391	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52401903					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	1234 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1413 bp upstream
Rr373672	regulatory region 373672	1875 bp downstream
Rr397176	regulatory region 397176	1124 bp upstream
Rr562509	regulatory region 562509	923 bp proximal
Rr562510	regulatory region 562510	1424 bp proximal
Rr562511	regulatory region 562511	1529 bp proximal
Rr562512	regulatory region 562512	1568 bp proximal
Rr562513	regulatory region 562513	1956 bp proximal
Tssr19307	transcription start site region 19307	1337 bp upstream
Tssr19308	transcription start site region 19308	1362 bp upstream
Tssr19309	transcription start site region 19309	1405 bp upstream
Tssr19310	transcription start site region 19310	1445 bp upstream
Tssr19311	transcription start site region 19311	1489 bp upstream