rs52402110 SNP Detail

Summary

• ID
  rs52402110
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48032479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCACAGG AAATGTGGCT GTGTTAAAAA CCTAAGTATG
  TACAATAAAG GTTGCTGGGT AATTTAAAAA AGACACCTTG ATTTTTTTTT TTGATTTTTT
  W
  AAAATCATTT TATTTTCTCT CTTTTTGTTG ATGTTGGTTC TTGAACCCAG GGTCTCATGG
  ATGCTAGCAA GCACCCTATT AGTGATTGAC ACTCCAGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145708703	ENSMUSSNP156805	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325406491	CHEV_17_47858503	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52402110					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48032479 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr12	DNA Segment, Chr 17, Derry C. Roopenian 12	1034 bp proximal
D17Mit66	DNA segment, Chr 17, Massachusetts Institute of Technology 66	1021 bp proximal
Gm65768	predicted gene, 65768	1761 bp upstream