rs52402137 SNP Detail

Summary

• ID
  rs52402137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAGGCGC TCCTGGGCTT
  ATAACCCCAG CACTCAGGAA CCCTAGGAAG GAGGGCTGTA AGCCTAATGC CAACCTGTGA
  AGTTTATTGA GATCCTCACT CAGAAAACAA AACTTAGGGC CAGCAAGATA GCTCATGCAC
  AAAAGGACAC ACACGCGCGC GCGCGTGCGC GCAAATGTAA AAAGTATCCC ACTCAACCCA
  Y
  GATCCCAAAA TGGGAAAACA AAACAAAATG AAAACAAAAC AAAACAAAAC AAAATAAAAA
  ACCAAAAACC CGTGATTAAC ATCTGGAAGT GGTAGCCCAT AGCAGTAATC TCAGCACTTG
  AGAAGGTAAG ACTGAAGACC ACATGTTTGG ACTAGTATGG GCTACATAGT AACTTCCAGA
  CCAGGCTTGT ATGCATGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135533	ENSMUSSNP4001704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52402137					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111664 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm10252	predicted gene 10252	1940 bp downstream
Gm73429	predicted gene, 73429	777 bp upstream
Gm73431	predicted gene, 73431	590 bp downstream
Rr380754	regulatory region 380754	808 bp downstream
Rr646450	regulatory region 646450	1866 bp distal
Rr646452	regulatory region 646452	1221 bp distal
Rr646453	regulatory region 646453	788 bp distal
Rr646454	regulatory region 646454	291 bp distal
Rr646455	regulatory region 646455	799 bp proximal
Tssr66542	transcription start site region 66542	1140 bp downstream
Tssr72399	transcription start site region 72399	1294 bp upstream
Tssr72400	transcription start site region 72400	1263 bp upstream