rs52402397 SNP Detail

Summary

• ID
  rs52402397
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70090387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTTCTGAAT TGTGCCTGGA AATGGAAGCT CACATCATCT
  AGGAGTAACA AAAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  T
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAAGG GAGAGAGACA
  GAAGGAGAGA GGAAACAAAC GTGATATCCT AGCAAGCTCC T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146733385	ENSMUSSNP672088	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52402397					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70090387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myo3b	myosin IIIB			Intron
				Noncoding-Transcript-Variant
Rr558530	regulatory region 558530			53 bp distal
Rr558531	regulatory region 558531			664 bp proximal
Rr558532	regulatory region 558532			1649 bp proximal
Rr558533	regulatory region 558533			1684 bp proximal