rs52403484 SNP Detail

Summary

• ID
  rs52403484
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38631402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT TCCCAGTTTC TCCCCTTCCC
  A
  GAAACCCCCT ATCCCATCCC CTCCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148000162	ENSMUSSNP4711952	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325150338	CHEV_16_38811153	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52403484					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38631402 () rs orientation: forward

Symbol	Name	Function Class
Rr515903	regulatory region 515903	1517 bp proximal
Rr515904	regulatory region 515904	1683 bp proximal
Tex55	testis expressed 55	1166 bp downstream