rs52403917 SNP Detail

Summary

• ID
  rs52403917
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116241513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTGAC AAAGAATGTG
  ATCTGATCCT AGGTTCTTTT TTTTTTTTTT AAATCATCAC TGCCCAAAGG CTGTTGTGAA
  GCAAAAGTGG GGATAGAAGC ACACATACAC ACATAGAAAC ACACAACACA CACATACACA
  CAGACACACA CACACACACA CAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  G
  AGTAGCAAAT ATCGATGTCT AAGGTAATGA ACGCAGCCTG GCTGTGTGAG AGCCCATCAG
  CCTTCACCTG TTATTTATAG CACTGTTGTT TACCCCACAT CAGCACAGGC ATCTCTGAAT
  TGGAGATGAC TAACAGTTTG GGTTGACTTG GTTTAATTAG ACTGAATTAA TATGGCCACC
  GTACAGTTGT GTGGGAGGGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135669728	ENSMUSSNP7069526	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52403917					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116241513 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	527 bp downstream
Gm66091	predicted gene, 66091	within coordinates