rs52405023 SNP Detail

Summary

• ID
  rs52405023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7738704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTTGGTT CTCAGCACTG ACATGGTGGC TCCCAACCAT
  CCCTAACTGT CATTCCAGGG CATCTGATGC CCTCTTCTGG CTTTCATTGG TACTAGGCAT
  M
  CATGTGGTAC ACACACACAC ACACACACAC ACACACACAC ACACACACAG GCGGGGACAA
  AACACTCATA TACATAAAAT AAAAATAAAT CTAAAAAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146757822	ENSMUSSNP2575365	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323244377	CHEV_10_7582738	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52405023					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7738704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	288 bp distal
Rr216483	regulatory region 216483	within coordinates
Rr220418	regulatory region 220418	704 bp distal
Rr223547	regulatory region 223547	482 bp proximal
Rr223550	regulatory region 223550	1290 bp proximal
Rr223552	regulatory region 223552	1799 bp proximal
Rr384104	regulatory region 384104	1747 bp upstream
Tssr92330	transcription start site region 92330	837 bp downstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates