rs52405383 SNP Detail

Summary

• ID
  rs52405383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16048775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGAGTTCGA TTCCCAGGAC CCACTTAGTA AAAGTCAAGA
  GTCTAATCTT ACATAGTGTT CTCTAACCTC CACATGTGCA CACACAGATC CCCCCTCTCT
  Y
  TCTCTTTCTC ATACACACAC AGACACACAC ACACACACAC ACACACACAC ACACACACAT
  TAATGGTTAA GAGAACTCTT ACAGAGAACC AGGGTCAGGT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148383626	ENSMUSSNP6571271	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52405383					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16048775 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18372	CpG island 18372	1698 bp distal
Cpgi18373	CpG island 18373	338 bp distal
Rr167075	regulatory region 167075	within coordinates
Rr380460	regulatory region 380460	249 bp upstream
Tssr64601	transcription start site region 64601	1175 bp downstream
Tssr64602	transcription start site region 64602	751 bp upstream
Tssr70736	transcription start site region 70736	863 bp upstream
Tssr70737	transcription start site region 70737	801 bp upstream
Tssr70738	transcription start site region 70738	787 bp upstream