rs52405884 SNP Detail

Summary

• ID
  rs52405884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93592761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATTATTAATT GGCACATCTA TTTTACATTT TAGTTATTAT
  AAATACTGTT TTATCATTAA TTTTGGTTTC TAAAAGTTTA TTGCGTATAT ATATATATAT
  R
  TATATATGTA TATACATGTA CATGCATATA CATATAATTT TGTGGCAGTG TGAATAAGAA
  AACAGGCAAA ATGATATCTT GTTTACAATT TACATTATTT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134247617	ENSMUSSNP1893442	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52405884					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93592761 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	1586 bp upstream
Rr4987	regulatory region 4987	561 bp distal
Rr10841	regulatory region 10841	518 bp distal