rs52405919 SNP Detail

Summary

• ID
  rs52405919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACCCGG GCTCAAAAAG
  TAAGGTGGAG AAGCAATGAG AAAAAACCCT TGATGTCAAC CTCTGGCCTC TGCATGAATG
  TGCATCAGGT GGTGGAAGCA AGTGTTCAAC TGTGTGCACA TGTGCACACA CACACACACA
  CGCACAAACA CACACATACA CAAACACATG CACAAGCATG CACCCCCACA TAAATACAAC
  R
  CTTTTTTTTG TGTTAAACAT AGCTGAAATT TAAAAGTTTT GCATTGGTGG ATCTGAGATT
  ATAGTTCATG GAAGAACACT TGCTTAGCTC CTGTGTGTGA AACCAGGCAT TGTATCCGCA
  ACACTGAAAA TAAAAATCAT GTTAAAAGAC GTATACTTAC ATGTGGAACA TTCCAATGTG
  GAAAACTGTT TCATAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132681515	ENSMUSSNP7100665	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52405919					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435230 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1971 bp proximal
Rr252638	regulatory region 252638	631 bp distal
Rr252639	regulatory region 252639	1372 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1970 bp downstream
Tssr104543	transcription start site region 104543	315 bp upstream
Tssr104544	transcription start site region 104544	969 bp upstream
Tssr104545	transcription start site region 104545	1022 bp upstream
Tssr104546	transcription start site region 104546	1030 bp upstream
Tssr104547	transcription start site region 104547	1072 bp upstream
Tssr104548	transcription start site region 104548	1166 bp upstream
Tssr104549	transcription start site region 104549	1179 bp upstream
Tssr104550	transcription start site region 104550	1237 bp upstream
Tssr104551	transcription start site region 104551	1265 bp upstream
Tssr104552	transcription start site region 104552	1286 bp upstream