rs52406186 SNP Detail

Summary

• ID
  rs52406186
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14370834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAATTTA CAAGCAGTAA
  ACCCTAGGAA CCAGTAAAAA CCGGGGAGCT TGTAGCCTCT AGGACTTGAT CGAGGAAATG
  ATGAATGGGG TGGGGGTGGG ATTGGGATTC CTGAGATTGT AATGTTTTGT CAGGCCAGCA
  AATCAGATTC CAGCCCAGAG TCTTGTTTAT CAAGCAGTGT TTGGGGGTTC ATCATCTGGA
  G
  GCTAAAGCCC CACAAAAGCC TTCTGTGTCT CTGTCTCTTT GTCTCGCCGT CTCTTTTTCC
  ATCTCGCTGT CTCTGTCTCT TGTTTCTGAC GTTCCCTGTG TGTTTATCTC TGTTTCTGTG
  TGTGTATGTT CAAATTCTTC GCTAGTCAAA GAGATCTTTC ATTCTGATGT ATTAAAGCAG
  GACTTTTTAG AGCCCTGTTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138986231	ENSMUSSNP4068317	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52406186					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14370834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			141 bp proximal
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			463 bp distal
Rr487875	regulatory region 487875			674 bp proximal
Tssr4245	transcription start site region 4245			660 bp downstream
Tssr124235	transcription start site region 124235			643 bp downstream