rs52406363 SNP Detail

Summary

• ID
  rs52406363
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135962641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC TGGGTTTTTT TTTCTTTTTT
  M
  TTTTAGGAGA GGGGGTCCTA CATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144510851	ENSMUSSNP3230101	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321698187	CHEV_5_136409657	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52406363					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135962641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	151 bp proximal
Gm40346	predicted gene, 40346	within coordinates
Gm57297	predicted gene, 57297	894 bp upstream
Rr378682	regulatory region 378682	within coordinates
Rr622478	regulatory region 622478	1074 bp distal
Rr622479	regulatory region 622479	811 bp distal
Rr622480	regulatory region 622480	within coordinates
Rr622481	regulatory region 622481	757 bp proximal
Rr622482	regulatory region 622482	905 bp proximal
Tssr49205	transcription start site region 49205	1302 bp upstream
Tssr53779	transcription start site region 53779	82 bp upstream
Tssr53780	transcription start site region 53780	770 bp downstream
Tssr53781	transcription start site region 53781	803 bp downstream
Tssr53782	transcription start site region 53782	832 bp downstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	within coordinates