rs52406374 SNP Detail

Summary

• ID
  rs52406374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27799501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAGGCC TGTCATCCAT
  TTTAAGTTGA TTTTTTTTAC AAGGTAGTGT GGGGTGTGCG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  GTTTCTGTTT TCTATAAGGG GAAAGATGAG AAAAAAGGAA GCTTTGACCA AAGACAGGAA
  W
  TTTTTTTTTA AAAAAAATGG AGGGAGAAGG AAAAAAGGGA TTAAAAAATA AGGGTTAAGG
  CTGGAGAGAT GGCTCAGTGG AGAGATGGCT CAGATGGCAC TGGCTGTTGG CTGTTCTTTC
  AGAGGACCTG TGTTCAGTTC CCAGCACCCA CATGGTGGCT GTGGAGAGAC AGAGACAATG
  ACAGACAGAC AGAGTTTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148631740	ENSMUSSNP352188	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52406374					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27799501 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Gm10935	predicted gene 10935	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Rr155708	regulatory region 155708	500 bp proximal
Rr170288	regulatory region 170288	414 bp proximal
Tssr65362	transcription start site region 65362	1178 bp upstream
Tssr65363	transcription start site region 65363	1219 bp upstream