rs52407648 SNP Detail

Summary

• ID
  rs52407648
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74208752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGA CCGCCTCCTC CAGCAGCTGC
  C
  GGGGGCTGGA AGGACTTGGA GGAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148354318	ENSMUSSNP706471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325248761	CHEV_16_74412109	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52407648					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74208752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	within coordinates
Robo2	roundabout guidance receptor 2	within coordinates
Rr319102	regulatory region 319102	1449 bp proximal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	434 bp upstream
Tssr141738	transcription start site region 141738	413 bp upstream
Tssr141739	transcription start site region 141739	321 bp upstream
Tssr141740	transcription start site region 141740	236 bp upstream
Tssr141741	transcription start site region 141741	133 bp upstream
Tssr141742	transcription start site region 141742	72 bp upstream
Tssr141743	transcription start site region 141743	58 bp upstream
Tssr141744	transcription start site region 141744	32 bp upstream
Tssr141745	transcription start site region 141745	2 bp downstream
Tssr141746	transcription start site region 141746	252 bp downstream