rs52408443 SNP Detail

Summary

• ID
  rs52408443
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65510189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACATG TGTGTGTGTG
  TATCTCACCT TGATTATATA TAATATGTAT ATATACATAC ATACATATAT ACATACATAC
  ATATATACAT ATATATACAT GTATACATAC ATACATATAC ACAGAGAGAG ACAGAGACAG
  AGTCAAAGAA AGACACAGAG ATACACAGAG AGAAAGTGTA TGTGTGTGTG TGTATGTGTG
  G
  GTGGGTGTGT GCACATTGAG AGTGCTACGG CATGTTTGTG CAAGTCAGAG GACAACTTTC
  ATGAGTCAGT TCTTACCTTC AGCTATGGGA CTCAGGGGTT AAACTCTGAC TGTCAGGTTT
  ATACTACAAA TACTTTTATC ATCTGAGCCC TCTCTCTACC CCTTAACTTT CTTTTAACAA
  ACTCCTTTTA CTACTGAGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147311813	ENSMUSSNP2592839	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52408443					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65510189 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	1408 bp downstream
Tssr153695	transcription start site region 153695	1702 bp upstream