rs52408629 SNP Detail

Summary

• ID
  rs52408629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTCTTACA TGCCAGGAAA TACTCTCTTC CTCTCTTTGG
  TTATTTCTCT TTTTTCTCCC TCCCCCATCC TCTCTTCATC TTTGTCCTGT CTGTCCCTCC
  Y
  TTCTCTTTAT TTTCAGTAAA AAAAAATGTA GTATAATATA TGCAGAAAAT ATTGTACAGA
  CCATTTCTTG ATAAATCTTC CCATGGTTAA TGTGTCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145227449	ENSMUSSNP6659357	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325312325	CHEV_17_18006703	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52408629					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090001 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	1400 bp proximal
Tssr5021	transcription start site region 5021	1402 bp upstream
Tssr5022	transcription start site region 5022	1426 bp upstream
Tssr5023	transcription start site region 5023	1955 bp downstream