rs52409410 SNP Detail

Summary

• ID
  rs52409410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38220353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AGGGTCTCTC TGTGTAGCCC
  Y
  TCCTGTCAAC AGGTTGGCCT CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148892325	ENSMUSSNP4867121	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52409410					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38220353 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	227 bp proximal
Riok1	RIO kinase 1	618 bp upstream
Rr281252	regulatory region 281252	within coordinates
Rr369679	regulatory region 369679	969 bp upstream
Tssr119342	transcription start site region 119342	858 bp upstream
Tssr122123	transcription start site region 122123	513 bp downstream
Tssr122124	transcription start site region 122124	548 bp downstream
Tssr122125	transcription start site region 122125	706 bp downstream
Tssr122126	transcription start site region 122126	788 bp downstream
Tssr122127	transcription start site region 122127	1542 bp downstream
Tssr122128	transcription start site region 122128	1564 bp downstream
Tssr122129	transcription start site region 122129	1594 bp downstream