rs52409515 SNP Detail

Summary

• ID
  rs52409515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCGGGA CTCGTGGAAG
  CCGGGATGGG TCCCTCGATG GCGGACGCCG ACGCCAGGCA GCCCCGGGTG GAAGGGAGGA
  GGAGGAGGAG GAGAGAGAGA CTTAGAGTCA GACAGAGGGA CAGAGAGAGA GACTTAGACA
  CAGAGACAGA GAGACAGAGA GAGGCTCTGT CCCTGCACTC CTACAGGTAC AACCTGGAGC
  R
  GCGGACGCGG ACCTGAACCC CCGTCTGCCC GGGGACGCCG CCGCCACGGC CACACCGCTC
  GTCTGGAACC ACGGCTGGCC TTCGGGTCCC AGATCCGTCC CCACGAGGCA GAGAACCGGG
  GGTGCACTTG CGCGTTTTTC GCCACCGGGT GGCCCCGGAG ATCGGCGCTG GGCCCTAGAC
  GCACTACAGC TCCCATGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60965530	NES16157290	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52409515					SNP	G	G	G	G	G	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965530	NES16157290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Rr642334	regulatory region 642334	within coordinates
Rr642335	regulatory region 642335	83 bp proximal
Rr642336	regulatory region 642336	136 bp proximal
Rr642337	regulatory region 642337	397 bp proximal
Tssr64464	transcription start site region 64464	104 bp downstream
Tssr70610	transcription start site region 70610	59 bp upstream
Tssr70611	transcription start site region 70611	18 bp upstream