rs52409805 SNP Detail

Summary

• ID
  rs52409805
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94443413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGGAAACTG TGTATTGTAC TCAGGTGTCA GGTTTGGCAG
  TGAGCACATT TACCCCTTGA GCCAGTCTCA CCAGCCCATG ATGTGGCTGG CTGGCTGGCT
  G
  TCTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT TCTTTCTTTC TTTCTTTCTT
  TTTCTTTTGT TTTTTCTAGA TAGGGTTTCT CTGTGTAGCC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135505858	ENSMUSSNP3410995	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52409805					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94443413 () rs orientation: forward

Symbol	Name	Function Class
Gm43773	predicted gene 43773	140 bp upstream
Gm43774	predicted gene 43774	505 bp downstream
Rr375397	regulatory region 375397	67 bp upstream
Rr580647	regulatory region 580647	1684 bp distal
Rr580648	regulatory region 580648	1939 bp distal
Snx27	sorting nexin family member 27	Intron