rs52409953 SNP Detail

Summary

• ID
  rs52409953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118689363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGCAAGGAAA GACACGATCT TTTAGTTTGT AAAAACTGGT
  TTATTTACAA TTTGGTATTT TAAAACTGTA TCTGAAATGA TATGTGTATA TATATATATA
  Y
  ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATACCCATCC CTGGGAAGTA
  ATCTATATTT ATTTAAATAT GGAGGCAAAG GGTAGAAAAT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147609219	ENSMUSSNP530035	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52409953					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118689363 () rs orientation: forward

Symbol	Name	Function Class
Gm67702	predicted gene, 67702	within coordinates
Rr226050	regulatory region 226050	563 bp distal
Rr226051	regulatory region 226051	239 bp proximal