rs52410340 SNP Detail

Summary

• ID
  rs52410340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TTTTCTTTTC TTATTTGTTT
  R
  TTTATTTATT TATTTATTTA TTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319989531	CHEV_1_137270437	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52410340					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	576 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13840	transcription start site region 13840	1972 bp upstream
Tssr13841	transcription start site region 13841	1528 bp upstream
Tssr13842	transcription start site region 13842	650 bp upstream
Tssr13843	transcription start site region 13843	439 bp upstream
Tssr13844	transcription start site region 13844	405 bp upstream
Tssr13845	transcription start site region 13845	377 bp upstream
Tssr13846	transcription start site region 13846	98 bp downstream
Tssr13847	transcription start site region 13847	559 bp downstream
Tssr13848	transcription start site region 13848	1059 bp downstream
Tssr13849	transcription start site region 13849	1076 bp downstream
Tssr13850	transcription start site region 13850	1095 bp downstream
Tssr13851	transcription start site region 13851	1239 bp downstream
Tssr13852	transcription start site region 13852	1363 bp downstream
Tssr13853	transcription start site region 13853	1373 bp downstream
Tssr13854	transcription start site region 13854	1390 bp downstream
Tssr13855	transcription start site region 13855	1408 bp downstream
Tssr13856	transcription start site region 13856	1422 bp downstream