rs52410530 SNP Detail

Summary

• ID
  rs52410530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65518591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATTTAA TATGTTAATA
  AATACACAAA AATCTGGTAG CCTAGTTGTC CTGAGTATTT AGGGGAATAT GATGATATTG
  TTTAAGGACA GTTACTTTAC CTAGTAAATA AAATTTAACT TTTAAAGTAT TTGTGTGTAC
  GCTGCTAAAG ACGGGGTGAA GGGTGGCCTT GGAGTTGCTG CTTTCTCTAG CTTTTCTTTT
  Y
  TAACTTTATT TTTTTAATTG TTTTTGCTTT CCCACGGATA CTCCTCTCCC CTCCCCTCCC
  CTCCCCTCCC CTCCTCTTTT CTTCTCTCCT CTCCTCTGCC ATTTAAACTC ATTTCCAATT
  CTTTGATGGA AGAAATCTAA AAAAATACGT CAAGGTTATA CATGTCAGAG CTTACGTTCC
  TGATTTCATA TTGAAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147312053	ENSMUSSNP5768382	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss325657198	CHEV_18_65545174	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52410530					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65518591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			204 bp distal
Rr539524	regulatory region 539524			842 bp proximal
Tssr151600	transcription start site region 151600			505 bp upstream
Tssr151601	transcription start site region 151601			535 bp upstream