rs52411518 SNP Detail

Summary

• ID
  rs52411518
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128060639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CATATCCTAT TAAACATTTA CTTTGATGTA AAGACTTTAC
  ATTAGGTTTA CATATATATA TACATGTAAT ATATACATGT GTATGTATAC ATATATATAT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTATA TATATATATA TATATATATA TATATATATA
  TATATAAACA AACTTCAGGA AGTATGACAA TACCTGTAAT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145891454	ENSMUSSNP773391	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52411518					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128060639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			1371 bp proximal
Rr656040	regulatory region 656040			932 bp proximal
Rr656041	regulatory region 656041			1547 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr75109	transcription start site region 75109			807 bp downstream