rs52411870 SNP Detail

Summary

• ID
  rs52411870
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9895184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCAGAA CAGGGAACAG
  CTGGAATCTA GCTACTGAGG CAAAGTGTGT ATGTATTGTT TGAAAAGGAA GGATGAAATA
  TCAGTAGAGA GAACTCGGTT GGTGGCAGGA GTTCTTTTTG GCATACTGCA GTTGTGGCGT
  TGTGCCTCCA AAGGCTCTCA GAAGCTCACT ACTGGAAACT CACTGTTGAG CAGCTTTGGA
  S
  AGACAGATAC ATGGCACGCA CATACATACA TACACACACA CACATACACA CACACACACA
  CACACACAGA GAGGGGGGGG GTTAGGAGGG GAGAGAGATC CAGAGCATCA GCCAGGTAGC
  AGTGAGCATC CATCTTAGAG TACTTTTAGT GGTAAGGATA TCAGCTAGGA GGGTTTCAGT
  AAACATTCAC TCACCTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134577501	ENSMUSSNP6402028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52411870					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9895184 () rs orientation: forward

Symbol	Name	Function Class
Gm55352	predicted gene, 55352	396 bp upstream
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr78180	regulatory region 78180	416 bp proximal