rs52412320 SNP Detail

Summary

• ID
  rs52412320
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13330027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATAGATCTA ACTAACTAAC TAACTAACCA TCGAATAAAA
  TATGTCCTAT CCTCCATCTC TCTGTCTCTG TCTCTGTCTC TGTCTCTGTC TCTGTCTCTG
  K
  CTCTGTCTCT CTCTCTCTCT CTCTCTCTGT GTGGTGAGTT AGACACATTT CCTGAAAGTC
  AGACAGATAG GGATAACGGC CATGACTAGA AAATAAGATG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134090797	ENSMUSSNP5293506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52412320					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13330027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22634	CpG island 22634	1684 bp distal
Rr394757	regulatory region 394757	1372 bp downstream
Rr690232	regulatory region 690232	1335 bp distal
Rr690234	regulatory region 690234	1657 bp distal
Rr690235	regulatory region 690235	316 bp distal