rs52413665 SNP Detail

Summary

• ID
  rs52413665
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAGTAG AAAGCCTTAT
  ACTCAAGTGC ATTCAGGAAG CACTGAGCAG ATAGAGTGGG TTTAAAACAA AGAGGAGCAC
  ATGAAATTGG GAGGGAAAAT CAGTGAGGTG GATAGGAGCA GGTTGTAGTG AGGAGAGTAA
  GGATGGGTTC ATTAAAAGTG AATTATATAA ATGCACAAAA TTTTCAAACA AAAATAATTT
  W
  AAAAAGAGAA GTCAAATGTG TGGTTGTAAG ATATATTTGT ATTTAAAATA AGGTTATCAA
  TTTCAAAATC AGATTGTGAG AAAGTCTAAT AGAAGTGCTC GTAATGAGTG CTAATATGTC
  AAATTAATTT ATTTAGTTTA ATTTTCCTAC TCAAGGATAC ATGTTTATTA CAATGTGTGA
  CTGCTGCTGA AGGTTCCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936913	NES16189343	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52413665					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936913	NES16189343	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259514 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	175 bp upstream
Tssr58809	transcription start site region 58809	837 bp upstream
Tssr58810	transcription start site region 58810	863 bp upstream
Tssr58811	transcription start site region 58811	899 bp upstream
Tssr63019	transcription start site region 63019	983 bp upstream
Tssr63020	transcription start site region 63020	51 bp upstream
Tssr63021	transcription start site region 63021	24 bp downstream
Tssr63022	transcription start site region 63022	59 bp downstream
Tssr63023	transcription start site region 63023	87 bp downstream
Tssr63024	transcription start site region 63024	190 bp downstream
Tssr63025	transcription start site region 63025	243 bp downstream
Tssr63026	transcription start site region 63026	254 bp downstream
Tssr63027	transcription start site region 63027	303 bp downstream
Tssr63028	transcription start site region 63028	316 bp downstream
Tssr63029	transcription start site region 63029	347 bp downstream
Tssr63030	transcription start site region 63030	377 bp downstream
Tssr63031	transcription start site region 63031	434 bp downstream
Tssr63032	transcription start site region 63032	458 bp downstream
Tssr63033	transcription start site region 63033	483 bp downstream
Tssr63034	transcription start site region 63034	502 bp downstream
Tssr63035	transcription start site region 63035	523 bp downstream
Tssr63036	transcription start site region 63036	577 bp downstream
Tssr63037	transcription start site region 63037	607 bp downstream
Tssr63038	transcription start site region 63038	644 bp downstream
Tssr63039	transcription start site region 63039	703 bp downstream
Tssr63040	transcription start site region 63040	761 bp downstream
Tssr63041	transcription start site region 63041	810 bp downstream
Tssr63042	transcription start site region 63042	835 bp downstream
Tssr63043	transcription start site region 63043	845 bp downstream
Tssr63044	transcription start site region 63044	867 bp downstream
Tssr63045	transcription start site region 63045	958 bp downstream
Tssr63046	transcription start site region 63046	977 bp downstream
Tssr63047	transcription start site region 63047	1000 bp downstream
Tssr63048	transcription start site region 63048	1028 bp downstream
Tssr63049	transcription start site region 63049	1043 bp downstream
Tssr63050	transcription start site region 63050	1067 bp downstream
Tssr63051	transcription start site region 63051	1119 bp downstream