rs52413893 SNP Detail

Summary

• ID
  rs52413893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106742912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTCTCTC TCTCTCTGTG TGTGTGTGTG
  TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGTGCGTGTG CGCGCACGCA CGCATTTGTG
  Y
  GTACAGATGC TAAGAACTGG TCTCGAATAC TCCACAAAGG CAGTAAGCCC TTTTAACTGC
  TTAGCCTTCT TTCTAGCCCA TAGCTTGACA TGATACAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss149009041	ENSMUSSNP1049534	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321634742	CHEV_5_107024065	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52413893					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106742912 () rs orientation: forward

Symbol	Name	Function Class
Gm28039	predicted gene, 28039	within coordinates
Rr616368	regulatory region 616368	447 bp distal