rs52414304 SNP Detail

Summary

• ID
  rs52414304
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93033557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTCTGGG GTGTTTGTTT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTCTGTTGGT TGGTTGGTTG GTTGTGAACC TATTAGTCTG GGGTGTTTGT
  K
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTCTG TTGGTTGGTT GGTTGGTTGT
  GAACCTATTA GTCTGGGTAA TCTGAGCCTA GAGAGACTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146939818	ENSMUSSNP4803871	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52414304					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93033557 () rs orientation: forward

Symbol	Name	Function Class
Rr561119	regulatory region 561119	1930 bp distal
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	718 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	1453 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr18989	transcription start site region 18989	1597 bp downstream
Tssr25280	transcription start site region 25280	77 bp downstream
Tssr25281	transcription start site region 25281	106 bp downstream
Tssr25282	transcription start site region 25282	125 bp downstream
Tssr25283	transcription start site region 25283	227 bp downstream
Tssr25284	transcription start site region 25284	442 bp downstream