rs52414336 SNP Detail

Summary

• ID
  rs52414336
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129473190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT AGTGTGCTCA AGGGTTAGGG
  C
  TTGCACCAGC AATTAGGGAG AGAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147443016	ENSMUSSNP2753813	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52414336					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129473190 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	848 bp upstream
Rr600283	regulatory region 600283	543 bp distal
Rr600284	regulatory region 600284	447 bp proximal
Rr600285	regulatory region 600285	1431 bp proximal
Tssr43532	transcription start site region 43532	880 bp upstream
Tssr43533	transcription start site region 43533	865 bp upstream
Tssr43534	transcription start site region 43534	837 bp upstream