rs52415993 SNP Detail

Summary

• ID
  rs52415993
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45024927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTCCCTG AAGAAGGGTC
  ACTAGATCTT CAACTGAGTC ACTACCTGCA CAAAATCAAG GCCAGCCTGT CTAAATGGGT
  TCCAGGACAT CGAGGGCCAC AGAGAGAAAC TGTCACCAAA ACCCAAAACA AACCAAAACA
  ATCAAATAAA CAAAAACAGC TCCCCCATCC CCCCAAAAGA AAGAAATCCC AATGAATCTG
  K
  TTACTAAGCA AGACTTGGCC AGTTGGTTTA TTAGTTTCCA GTCTGTATTC CACAGACCTT
  TTTAAAATTA TCTCCTCAGA AAAGACTATA TACTTGGCAT ACATTTGACA GCTTAAGGAT
  AGCTTCATCC TCATTCATCA TTTCTGAGGG TTAAGTCCAT AGCTACTTGG CCCCATATAC
  TTAGCAGGAA CCTGTGGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61003651	NES16116922	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52415993					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003651	NES16116922	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45024927 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	950 bp downstream
Tssr66520	transcription start site region 66520	1667 bp upstream