rs52416315 SNP Detail

Summary

• ID
  rs52416315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52315365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGGGAGGGA AGGAGAGGAG AGAAGACGGG AAGGGGGGAG
  GGGAGAGGAG AGGAGAGAGG AGAAGAGGAG AGGAGGAGGG AAGGGGAGAG GGGAGAGGAA
  R
  GAGAAGAGAT TAACTCAAGA TACAACCAGA GCATAACAAC AGGATTACTG GTTTTAGTCA
  CCTCTTTTCC TTTTTATGTT ATTCAAAACT CAATTTGATG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139500762	ENSMUSSNP1176343	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52416315					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52315365 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	1236 bp proximal
Tssr128488	transcription start site region 128488	122 bp downstream
Tssr128489	transcription start site region 128489	1618 bp downstream