rs52417934 SNP Detail

Summary

• ID
  rs52417934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172198569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTAGTGT TTCCTGGGAA TAGGAAGACC
  TTAACCAATG ctctctctct ctctctctct ctctctctct ctctctctct ctctctccct
  ccctccctcc ctccctccct ccctccctcc ctccctccct ctctctctct ctctctctct
  Y
  tctctctctc tctctttcAT Gggctgtcct tgaatttact atgtagacta ggctggcctt
  gaactcacag atacctagct gcctccgtct cccatatact gggattaaag gcatgaacca
  ctatgccaag cCCCCAATGT TCTCTTGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320124593	CHEV_1_174301133	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52417934					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172198569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1546 bp distal
Cpgi1046	CpG island 1046	1033 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Tssr10190	transcription start site region 10190	517 bp downstream
Tssr10191	transcription start site region 10191	301 bp downstream
Tssr10192	transcription start site region 10192	121 bp downstream